DGD: Duplicated Genes Database Use an ensembl id file OR a species (+ chromosome (+begin + end)) as input options: -h, --help show this help message and exit -v, --version show this script version -s SPECIES, --species=SPECIES the species in which to look for duplicated genes -c CHROMOSOME, --chromosome=CHROMOSOME the chromosome in which to look for duplicated genes -b BEGIN, --begin=BEGIN start position of a chromosomal region -e END, --end=END end position of a chromosomal region -i FILE, --input-ensids=FILE a file containing a list of ensembl gene ids (one line per id) -o FILE, --output=FILE the output file where duplicate gene list will be saved The species in which to look for duplicated genes (optional). The chromosome in which to look for duplicated genes (optional). Start position of a chromosomal region (optional). End position of a chromosomal region (optional). A file containing a list of ensembl gene ids (one line per id) The output file where duplicate gene list will be saved (required) Returns metadata about the application. This includes usage information, along with any number of arbitrary application-specific metadata specified as an array of info elements, e.g. description of the various options that are passed to the application binary. Requires all the parameters with correct type, and structures representing the input files. The structure contains the name of the input file and either the contents in Base64 encoded binary form or a MIME attachment, or simply a location (URL) to the associated file. The operation returns a Job ID that can be used to retrieve job status and outputs. Same as launchJob but blocks until the remote execution is complete, and returns job outputs (as described above) as the response. This operation may only be appropriate for jobs that are not long running. Expects a Job ID to query the status of a running job. A status code, message, and URL of the working directory for the job are returned. Returns basic job statistics including start time, activation time and completion time for a given Job ID. returns the outputs from a job that is identified by a Job ID. The output consists of the urls for the standard output and error, and an array of structures representing the output files. The structure contains the name of the output file and the url from where it can be downloaded. Returns the contents of an output file as Base64 binary. The input is a data structure that contains the Job ID for a particular job, and the name of the file to be retrieved. Destroys a running job identified by a Job ID.